Package: x2goclient Version: 4.0.5.1-2016.08.18
On Windows 7 using the built-in X server of X2Go Client starting nmrDraw fails.
It is a program from the NMRPipe environment, installation guide is below.
Xfce is used as session.
X2Go server is: Fedora 24 x86_64 (reproducable with Fedora 22 x86_64 as X2Go server) $ rpm -q x2goserver x2goserver-4.0.1.19-11.fc24.x86_64
$ rpm -q x2goserver-xsession x2goserver-xsession-4.0.1.19-11.fc24.x86_64
$ rpm -q nxagent nxagent-3.5.0.32-4.fc24.x86_64
After starting nmrDraw from the terminal no window of nmrDraw appears as expected. The error message is: $ nmrDraw ... (NMRDraw) XView error: Cannot open connection to window server: :50.0 (Server package)
Using a different X server is a workaround. The steps are:
- download freeware: http://mobaxterm.mobatek.net/download.html -- Home Edition if you lack administrative rights to install 'installer edition', download and extract 'portable edition'
- close all X2Go connections
- reconfigure X2Go client: X2Go Client -- Options -- Settings... -- X.Org Server settings: |x| use custom X-Server change from: executable: C:\program files\vcxsrv\vcxsrv.exe command line options: -multiwindow -notrayicon -clipboard to: # for portable version executable: path to MobaXterm_Personal_9.0.exe # for installer version (packages extracted during runtime to %temp%\Mxt90 ; X-Server is: %temp%\Mxt90\bin\XWin_MobaX.exe) executable: %programfiles%\Mobatek\MobaXterm Personal Edition\MobaXterm.exe on 64 bit OS: %programfiles(x86)%\Mobatek\MobaXterm Personal Edition\MobaXterm.exe # either version append to command line options: -silent-dup-error -nolisten inet6 -hostintitle +bs -nowgl -noreset :0
- restart X2Go client
Other X2Go clients I tested and the outcome of starting nrmDraw:
on Lubuntu 14.04 with X2Go Client 4.0.1.1: error
on Mac OS X 10.10.6 with X2Go Client 4.0.5.1: OK
on Fedora 24 x86_64 with X2Go Client 4.0.5.1: OK
The installation guide for NMRPipe follows. The commands work for Fedora 24 x86_64 using a Bash shell.
### NMRPipe (analyze NMR spectra) installation guide
### website: https://www.ibbr.umd.edu/nmrpipe/install.html ; old: http://spin.niddk.nih.gov/NMRPipe/
# user must use tcsh to use programs, f.e. nmrDraw
### download installation files ## required: wget --timestamping 'http://spin.niddk.nih.gov/NMRPipe/install/download/install.com' # install script wget --timestamping 'http://spin.niddk.nih.gov/NMRPipe/install/download/binval.com' # an auxiliary script which determines system type wget --timestamping 'http://spin.niddk.nih.gov/NMRPipe/install/download/NMRPipeX.tZ' # data for all versions of NMRPipe # font.com not required! only use the "font.com" script if the "install.com" procedure or README_NMRPIPE_USERS file indicates that it is needed for your system (mostly just SGI/IRIX systems, and some versions of Linux) ## optional: #wget --timestamping 'http://spin.niddk.nih.gov/NMRPipe/install/download/talos.tZ' # files required for TALOS+ and SPARTA+ #wget --timestamping 'http://spin.niddk.nih.gov/NMRPipe/install/download/dyn.tZ' # files required for DYNAMO and MFR # DemonstrationData #wget --timestamping 'http://spin.niddk.nih.gov/NMRPipe/install/data/data.tar' #wget --timestamping 'http://spin.niddk.nih.gov/NMRPipe/install/valpha/valpha_all.tar'
### download installation files -- no difference # http://nmrpipe.org/install.html ## required: #wget --timestamping 'https://www.ibbr.umd.edu/nmrpipe/install.com' # Install script #wget --timestamping 'https://www.ibbr.umd.edu/nmrpipe/binval.com' # Used by install script #wget --timestamping 'https://www.ibbr.umd.edu/nmrpipe/NMRPipeX.tZ' # NMRPipe executables and files for Linux and Mac OS X #wget --timestamping 'https://www.ibbr.umd.edu/nmrpipe/s.tZ' # NIST IBBR Updates for NMRPipe ## optional: #wget --timestamping 'https://www.ibbr.umd.edu/nmrpipe/dyn.tZ' # Optional Ramachandran surfaces for TALOS+ graphics, PDB data and all files for DYNAMO and MFR #wget --timestamping 'https://www.ibbr.umd.edu/nmrpipe/talos.tZ' # Files required for TALOS-N, TALOS+, and SPARTA+
### installation ## required programs dnf install -y tcsh dnf install -y xterm
## 32 bit compatibility libs # ia32-libs @Debian/Ubuntu is the 32-bit version of the C standard library; glibc.i686 @Fedora dnf install -y glibc dnf install -y glibc.i*
## for nmrDraw on 64-bit Fedora dnf install -y libX11.so.6 dnf install -y libXext.so.6
## some programs, such as SPARTA+ and TALOS+, might require 32-bit C++ libraries # $ repoquery -f */libstdc++.so # compat-gcc-34-c++-0:3.4.6-24.fc17.x86_64 # libstdc++-devel-0:4.7.2-8.fc18.i686 # gcc-c++-0:4.7.2-8.fc18.x86_64 dnf install -y libstdc++.so.6 dnf install -y libstdc++-devel.i*
## fonts dnf install -y xorg-x11-fonts-100dpi dnf install -y xorg-x11-fonts-ISO8859-1-100dpi dnf install -y xorg-x11-fonts-75dpi dnf install -y xorg-x11-fonts-ISO8859-1-75dpi dnf install -y xorg-x11-fonts-misc
## for test after installation dnf install -y xset
## put installation files into place DIR0="/usr/local/NMRPipe" mkdir -p "${DIR0}" for F in *.tZ; do mv "${F}" "${DIR0}" done for F in *.com; do mv "${F}" "${DIR0}" done # required for access later on chmod o+rx "${DIR0}" cd "${DIR0}"
# *.Z and *.tar not present for F in *.tZ; do chmod a+r "${F}" done for F in *.com; do chmod a+rx "${F}" done
#./install.com +help to generate a list of install command-line options and help
#tcsh "${DIR0}/install.com" # tcsh not required for installation, works with Bash; execution or program requires tcsh, though
"${DIR0}/install.com"
## modify config file to source environment automatically # man 1 tcsh => global file = /etc/csh.cshrc ; private file = ~/.cshrc # not changing /etc/csh.cshrc because ancient gnuplot from NMRPipe would be used by default, hence break workflow for other users
# note TCSH is required to start/use programs!
# users with Bash as default shell have to start TCSH before they can start nmrDraw
FILE="${HOME}/.cshrc"
echo "### NMRPipe" >> "${FILE}"
# see above for DIR0 value!
grep -v "#" /usr/local/NMRPipe/example.cshrc | grep -v '^$' >> "${FILE}"
# Some previous versions of NMRPipe have an expiration date. To override the expiration date:
echo "setenv NMR_CONT CORRECT_ALL" >> "${FILE}"
# full path to nmrDraw: /usr/local/NMRPipe/nmrbin.linux9/nmrDraw
Kind regards, René
-
René Genz