Just started happening today. Something in the new build that could've caused this? I see an old thread at http://lists.x2go.org/pipermail/x2go-user/2013-July/001515.html not sure if it's really the same issue though.
rpm -q x2goserver
x2goserver-4.1.0.0-0.0x2go1.0.git20171218.1453.heuler.fc26.x86_64
server debug log:
Dec 19 20:44:20 sobolev systemd-logind[6573]: New session 1193 of user kudyba.
Dec 19 20:44:21 sobolev /usr/bin/x2gostartagent[28949]: x2gostartagent called with options: 800x600 adsl 16m-jpeg-9 unix-kde-depth_32 us query 0 D XFCE both
Dec 19 20:44:21 sobolev /usr/bin/x2gosessionlimit[28965]: x2gosessionlimit has been called
Dec 19 20:44:21 sobolev x2golistsessions[28966]: x2golistsessions has been called with options: --all-servers
Dec 19 20:44:23 sobolev x2gocleansessions[23160]: kudyba-50-1513734261_stDXFCE_dp32: state file for this session does not exist: /tmp/.x2go-kudyba/C-kudyba-50-1513734261_stDXFCE_dp32/state (this can be ignored during session startups)
Dec 19 20:44:23 sobolev /usr/bin/x2gofeature[29088]: x2gofeature called with options: X2GO_RUN_EXTENSIONS
Dec 19 20:44:23 sobolev /usr/share/x2go/x2gofeature.d/x2goserver-extensions.features[29093]: x2goserver-extensions.features called with options: X2GO_RUN_EXTENSIONS
Dec 19 20:44:23 sobolev /usr/bin/x2goserver-run-extensions[29098]: x2goserver-run-extensions called with options: kudyba-50-1513734261_stDXFCE_dp32 pre-start
Dec 19 20:44:24 sobolev /usr/bin/x2gostartagent[29111]: creating new session: kudyba-50-1513734261_stDXFCE_dp32 8e1465b1108ca7aa37f108de97ee7694 29109 65.78.12.82 58571 58572 58573 -1 -1
Dec 19 20:44:24 sobolev /usr/bin/x2gostartagent[29119]: blocking creation of agent's keyboard file /tmp/.x2go-kudyba/C-kudyba-50-1513734261_stDXFCE_dp32/keyboard as requested by session startup command
Dec 19 20:44:24 sobolev /usr/bin/x2gostartagent[29121]: successfully started X2Go agent session with ID kudyba-50-1513734261_stDXFCE_dp32
Dec 19 20:44:24 sobolev /usr/bin/x2gofeature[29128]: x2gofeature called with options: X2GO_RUN_EXTENSIONS
Dec 19 20:44:24 sobolev /usr/share/x2go/x2gofeature.d/x2goserver-extensions.features[29133]: x2goserver-extensions.features called with options: X2GO_RUN_EXTENSIONS
Dec 19 20:44:24 sobolev /usr/bin/x2goserver-run-extensions[29138]: x2goserver-run-extensions called with options: kudyba-50-1513734261_stDXFCE_dp32 post-start
Dec 19 20:44:24 sobolev systemd-logind[6573]: Removed session 1193.
Dec 19 20:44:25 sobolev /usr/bin/x2gosuspend-session[29148]: x2gosuspend-session called with options: kudyba-51-1513733787_stDMATE_dp32
Dec 19 20:44:25 sobolev /usr/bin/x2gofeature[29163]: x2gofeature called with options: X2GO_DESKTOPSHARING
Dec 19 20:44:25 sobolev /usr/share/x2go/x2gofeature.d/x2goserver-extensions.features[29168]: x2goserver-extensions.features called with options: X2GO_DESKTOPSHARING
Dec 19 20:44:25 sobolev /usr/share/x2go/x2gofeature.d/x2goserver.features[29173]: x2goserver.features called with options: X2GO_DESKTOPSHARING
Dec 19 20:44:25 sobolev /usr/share/x2go/x2gofeature.d/x2goserver-x2goagent.features[29179]: x2goserver-x2goagent.features called with options: X2GO_DESKTOPSHARING
Dec 19 20:44:25 sobolev /usr/share/x2go/x2gofeature.d/x2goserver-xsession.features[29184]: x2goserver-xsession.features called with options: X2GO_DESKTOPSHARING
Dec 19 20:44:25 sobolev /usr/bin/x2gofeature[29191]: x2gofeature called with options: X2GO_RUN_EXTENSIONS
Dec 19 20:44:25 sobolev /usr/share/x2go/x2gofeature.d/x2goserver-extensions.features[29197]: x2goserver-extensions.features called with options: X2GO_RUN_EXTENSIONS
Dec 19 20:44:25 sobolev /usr/bin/x2goserver-run-extensions[29202]: x2goserver-run-extensions called with options: kudyba-51-1513733787_stDMATE_dp32 pre-suspend
Dec 19 20:44:25 sobolev x2goumount-session[29210]: x2goumount-session has been called with options: kudyba-51-1513733787_stDMATE_dp32
client debug log from a Mac:
x2go-DEBUG-../src/onmainwindow.cpp:2851> Creating QPixmap with session icon: '":/img/icons/128x128/x2gosession.png"'.
x2go-DEBUG-../src/onmainwindow.cpp:6541> Setting focus.
x2go-INFO-8> "Starting connection to server: our domain:22"
x2go-DEBUG-../src/onmainwindow.cpp:2952> Starting new ssh connection to server:"our domain":"22" krbLogin: false
x2go-DEBUG-../src/sshmasterconnection.cpp:175> SshMasterConnection, host "our domain"; port 22; user "kudyba"; useproxy false; proxyserver ""; proxyport 22
x2go-DEBUG-../src/sshmasterconnection.cpp:248> Starting SSH connection without Kerberos authentication.
x2go-DEBUG-../src/sshmasterconnection.cpp:252> SshMasterConnection, instance SshMasterConnection(0x7fc3b0edda20) created.
x2go-DEBUG-../src/sshmasterconnection.cpp:520> SshMasterConnection, instance SshMasterConnection(0x7fc3b0edda20) entering thread.
x2go-DEBUG-../src/sshmasterconnection.cpp:834> Session port before config file parse: 22
x2go-DEBUG-../src/sshmasterconnection.cpp:844> Session port after config file parse: 22
x2go-DEBUG-../src/sshmasterconnection.cpp:909> Session port before config file parse (part 2): 22
x2go-DEBUG-../src/sshmasterconnection.cpp:919> Session port after config file parse (part 2): 22
x2go-DEBUG-../src/sshmasterconnection.cpp:944> cserverAuth
x2go-DEBUG-../src/sshmasterconnection.cpp:985> state: 1
x2go-DEBUG-../src/sshmasterconnection.cpp:1268> Trying password mechanism if available.
x2go-DEBUG-../src/sshmasterconnection.cpp:1272> Password mechanism available. Continuing.
x2go-DEBUG-../src/sshmasterconnection.cpp:726> User authentication OK.
x2go-DEBUG-../src/sshmasterconnection.cpp:1764> LOGIN CHECK:"LOGIN OK
"
x2go-DEBUG-../src/sshmasterconnection.cpp:1767> don't have interaction
x2go-DEBUG-../src/sshmasterconnection.cpp:1800> LOOP FINISHED
x2go-DEBUG-../src/sshmasterconnection.cpp:1804> No interaction needed, continue session
x2go-DEBUG-../src/sshmasterconnection.cpp:730> Login Check - OK
x2go-DEBUG-../src/onmainwindow.cpp:3058> SSH connection established.
x2go-DEBUG-../src/onmainwindow.cpp:3459> Continue normal X2Go session
x2go-DEBUG-../src/sshprocess.cpp:199> Executing remote command via SshProcess object 0: "export HOSTNAME && x2golistsessions"
x2go-DEBUG-../src/sshprocess.cpp:213> this=SshProcess(0x7fc3b20da410) Running masterCon->addChannelConnection(this, ' "455b5cc1-bd76-48f5-85bb-c91717fb47ae" ', ' "bash -l -c 'echo "X2GODATABEGIN:455b5cc1-bd76-48f5-85bb-c91717fb47ae"; export PATH="/usr/local/bin:/usr/bin:/bin";export TERM="dumb"; export HOSTNAME && x2golistsessions; echo "X2GODATAEND:455b5cc1-bd" ');
x2go-DEBUG-../src/sshmasterconnection.cpp:1866> Locking SSH channel connection MUTEX.
x2go-DEBUG-../src/sshmasterconnection.cpp:1868> Passing new channel connection object to channelConnections.
x2go-DEBUG-../src/sshmasterconnection.cpp:1870> Unlocking SSH channel connection MUTEX.
x2go-DEBUG-../src/sshmasterconnection.cpp:2058> Creating new channel.
x2go-DEBUG-../src/sshmasterconnection.cpp:2075> New channel:0x7fc3b0f67440
x2go-DEBUG-../src/sshmasterconnection.cpp:2160> Executing remote: "bash -l -c 'echo "X2GODATABEGIN:455b5cc1-bd76-48f5-85bb-c91717fb47ae"; export PATH="/usr/local/bin:/usr/bin:/bin";export TERM="dumb"; export HOSTNAME && x2golistsessions; echo "X2GODATAEND:455b5cc1-bd76-48f5-85bb-c91717fb47ae";'"
x2go-DEBUG-../src/sshmasterconnection.cpp:2183> New exec channel created.
x2go-DEBUG-../src/sshmasterconnection.cpp:2232> EOF on channel 0x7fc3b0f67440; SshProcess object: 0
x2go-DEBUG-../src/sshmasterconnection.cpp:2355> EOF sent.
x2go-DEBUG-../src/sshmasterconnection.cpp:2359> Channel closed.
x2go-DEBUG-../src/sshprocess.cpp:526> SSH finished: raw output (stdout): "X2GODATABEGIN:455b5cc1-bd76-48f5-85bb-c91717fb47ae
X2GODATAEND:455b5cc1-bd76-48f5-85bb-c91717fb47ae
"
x2go-DEBUG-../src/sshprocess.cpp:537> SSH finished: true - "" (0).
x2go-DEBUG-../src/onmainwindow.cpp:3927> ""
x2go-DEBUG-../src/onmainwindow.cpp:4487> Executing remote command: "X2GODPI=72 x2gostartagent 800x600 adsl 16m-jpeg-9 unix-kde-depth_32 us query 0 D XFCE both"
x2go-DEBUG-../src/sshprocess.cpp:199> Executing remote command via SshProcess object 1: "X2GODPI=72 x2gostartagent 800x600 adsl 16m-jpeg-9 unix-kde-depth_32 us query 0 D XFCE both"
x2go-DEBUG-../src/sshprocess.cpp:213> this=SshProcess(0x7fc3b2055000) Running masterCon->addChannelConnection(this, ' "7d75448a-fe94-4607-b475-80d7f9629e93" ', ' "bash -l -c 'echo "X2GODATABEGIN:7d75448a-fe94-4607-b475-80d7f9629e93"; export PATH="/usr/local/bin:/usr/bin:/bin";export TERM="dumb"; X2GODPI=72 x2gostartagent 800x600 adsl 16m-jpeg-9 unix-kde-depth_3" ');
x2go-DEBUG-../src/sshmasterconnection.cpp:1866> Locking SSH channel connection MUTEX.
x2go-DEBUG-../src/sshmasterconnection.cpp:1868> Passing new channel connection object to channelConnections.
x2go-DEBUG-../src/sshmasterconnection.cpp:1870> Unlocking SSH channel connection MUTEX.
x2go-DEBUG-../src/sshmasterconnection.cpp:2058> Creating new channel.
x2go-DEBUG-../src/sshmasterconnection.cpp:2075> New channel:0x7fc3b20f5fb0
x2go-DEBUG-../src/sshmasterconnection.cpp:2160> Executing remote: "bash -l -c 'echo "X2GODATABEGIN:7d75448a-fe94-4607-b475-80d7f9629e93"; export PATH="/usr/local/bin:/usr/bin:/bin";export TERM="dumb"; X2GODPI=72 x2gostartagent 800x600 adsl 16m-jpeg-9 unix-kde-depth_32 us query 0 D XFCE both; echo "X2GODATAEND:7d75448a-fe94-4607-b475-80d7f9629e93";'"
x2go-DEBUG-../src/sshmasterconnection.cpp:2183> New exec channel created.
x2go-DEBUG-../src/sshmasterconnection.cpp:2287> EOF on channel 0x7fc3b20f5fb0; SshProcess object: 1
x2go-DEBUG-../src/sshmasterconnection.cpp:2355> EOF sent.
x2go-DEBUG-../src/sshmasterconnection.cpp:2359> Channel closed.
x2go-DEBUG-../src/sshprocess.cpp:526> SSH finished: raw output (stdout): "X2GODATABEGIN:7d75448a-fe94-4607-b475-80d7f9629e93
50
8e1465b1108ca7aa37f108de97ee7694
29109
kudyba-50-1513734261_stDXFCE_dp32
58571
58572
58573
X2GODATAEND:7d75448a-fe94-4607-b475-80d7f9629e93
"
x2go-DEBUG-../src/sshprocess.cpp:537> SSH finished: true - "50
8e1465b1108ca7aa37f108de97ee7694
29109
kudyba-50-1513734261_stDXFCE_dp32
58571
58572
58573
" (1).
x2go-DEBUG-../src/onmainwindow.cpp:5306> Agent output: "50
8e1465b1108ca7aa37f108de97ee7694
29109
kudyba-50-1513734261_stDXFCE_dp32
58571
58572
58573
"
x2go-DEBUG-../src/sshprocess.cpp:381> Starting tunnel via SshProcess object 2: "localhost":58571 -> "localhost":59571
x2go-DEBUG-../src/onmainwindow.cpp:5909> "Starting NX proxy, command: "/Applications/x2goclient.app/Contents/exe/"nxproxy -S nx/nx,options=/Users/rkudyba/.x2go/S-kudyba-50-1513734261_stDXFCE_dp32/options:50"
x2go-DEBUG-../src/sshprocess.cpp:157> Direct tunnel: waiting for connections on "localhost":59571
x2go-DEBUG-../src/onmainwindow.cpp:6381> Proxy wrote on stderr: "
"
x2go-DEBUG-../src/onmainwindow.cpp:6381> Proxy wrote on stderr: "N"
x2go-DEBUG-../src/onmainwindow.cpp:6381> Proxy wrote on stderr: "XPROXY - Version 3.5"
x2go-DEBUG-../src/onmainwindow.cpp:6381> Proxy wrote on stderr: ".0
Copyright (C) 2001, 2010 NoMachine.
See http://www.nomachine.com/ for more information.
Info: Proxy running in client mode with pid '"
x2go-DEBUG-../src/onmainwindow.cpp:6381> Proxy wrote on stderr: "43808'.
Session: Starting session at '"
x2go-DEBUG-../src/onmainwindow.cpp:6381> Proxy wrote on stderr: "T"
x2go-DEBUG-../src/onmainwindow.cpp:6381> Proxy wrote on stderr: "u"
x2go-DEBUG-../src/onmainwindow.cpp:6381> Proxy wrote on stderr: "e"
x2go-DEBUG-../src/onmainwindow.cpp:6381> Proxy wrote on stderr: " "
x2go-DEBUG-../src/onmainwindow.cpp:6381> Proxy wrote on stderr: "D"
x2go-DEBUG-../src/onmainwindow.cpp:6381> Proxy wrote on stderr: "e"
x2go-DEBUG-../src/onmainwindow.cpp:6381> Proxy wrote on stderr: "c"
x2go-DEBUG-../src/onmainwindow.cpp:6381> Proxy wrote on stderr: " 19 20:44:24 2017'.
"
x2go-DEBUG-../src/onmainwindow.cpp:6381> Proxy wrote on stderr: "Info: Connecting to remote host 'localhost:59571'.
"
x2go-DEBUG-../src/onmainwindow.cpp:6381> Proxy wrote on stderr: "Info: Connection to remote proxy 'localhost:59571' established.
"
x2go-DEBUG-../src/sshprocess.cpp:109> New TCP connection.
x2go-DEBUG-../src/sshprocess.cpp:114> New socket: 27
x2go-DEBUG-../src/sshmasterconnection.cpp:2058> Creating new channel.
x2go-DEBUG-../src/sshmasterconnection.cpp:2075> New channel:0x7fc3b0de99f0
x2go-DEBUG-../src/sshmasterconnection.cpp:2081> Forwarding parameters: from remote ("localhost":58571) to local ("localhost":53987)
x2go-DEBUG-../src/sshmasterconnection.cpp:2118> Temporary session port after config file parse: 58571
x2go-DEBUG-../src/sshmasterconnection.cpp:2122> Temporary session host after config file parse: localhost
x2go-DEBUG-../src/sshmasterconnection.cpp:2152> New channel forwarded.
x2go-DEBUG-../src/sshmasterconnection.cpp:2312> "ssh_channel_write failed": "Remote channel is closed"
x2go-DEBUG-../src/sshprocess.cpp:472> I/O error: "ssh_channel_write failed."" - Remote channel is closed" (2).
x2go-DEBUG-../src/sshmasterconnection.cpp:2355> EOF sent.
x2go-DEBUG-../src/sshmasterconnection.cpp:2359> Channel closed.
x2go-DEBUG-../src/onmainwindow.cpp:6381> Proxy wrote on stderr: "E"
x2go-DEBUG-../src/onmainwindow.cpp:6381> Proxy wrote on stderr: "rror: The remote NX proxy closed the connection.
Error: Failure negotiating the session in stage '7'.
Error: Wrong version or invalid session authentication cookie.
Session: Terminating session at 'Tue Dec 19 20:44:24 2017'.
Session: Session terminated at 'Tue Dec 19 20:44:24 2017'.
"
x2go-DEBUG-../src/onmainwindow.cpp:6234> Deleting Proxy.
x2go-DEBUG-../src/onmainwindow.cpp:6283> Waiting for proxy to exit.
x2go-DEBUG-../src/onmainwindow.cpp:6307> Checking exit status.
x2go-DEBUG-../src/sshprocess.cpp:199> Executing remote command via SshProcess object 3: "x2gocmdexitmessage kudyba-50-1513734261_stDXFCE_dp32"
x2go-DEBUG-../src/sshprocess.cpp:213> this=SshProcess(0x7fc3b0f7f930) Running masterCon->addChannelConnection(this, ' "cfa8f90d-7ff6-471b-97c0-88c649e13b29" ', ' "bash -l -c 'echo "X2GODATABEGIN:cfa8f90d-7ff6-471b-97c0-88c649e13b29"; export PATH="/usr/local/bin:/usr/bin:/bin";export TERM="dumb"; x2gocmdexitmessage kudyba-50-1513734261_stDXFCE_dp32; echo "X2GODA" ');
x2go-DEBUG-../src/sshmasterconnection.cpp:1866> Locking SSH channel connection MUTEX.
x2go-DEBUG-../src/sshmasterconnection.cpp:1868> Passing new channel connection object to channelConnections.
x2go-DEBUG-../src/sshmasterconnection.cpp:1870> Unlocking SSH channel connection MUTEX.
x2go-DEBUG-../src/sshmasterconnection.cpp:2058> Creating new channel.
x2go-DEBUG-../src/sshmasterconnection.cpp:2075> New channel:0x7fc3b20b0f10
x2go-DEBUG-../src/sshmasterconnection.cpp:2160> Executing remote: "bash -l -c 'echo "X2GODATABEGIN:cfa8f90d-7ff6-471b-97c0-88c649e13b29"; export PATH="/usr/local/bin:/usr/bin:/bin";export TERM="dumb"; x2gocmdexitmessage kudyba-50-1513734261_stDXFCE_dp32; echo "X2GODATAEND:cfa8f90d-7ff6-471b-97c0-88c649e13b29";'"
x2go-DEBUG-../src/sshmasterconnection.cpp:2168> "ssh_channel_open_session failed": "Socket error: Unknown error: 316"
x2go-DEBUG-../src/onmainwindow.cpp:6364> Finished proxy.
x2go-DEBUG-../src/sshprocess.cpp:472> I/O error: "ssh_channel_open_session failed."" - Socket error: Unknown error: 316" (3).
x2go-DEBUG-../src/onmainwindow.cpp:6541> Setting focus.
ps -auwx | grep x2go
kudyba 24707 0.0 0.0 120176 3220 ? Ss 20:38 0:00 bash -l -c echo "X2GODATABEGIN:27cb07d2-e0db-4b73-a4df-9eb0c337c5dc"; export PATH="/usr/local/bin:/usr/bin:/bin";export TERM="dumb"; x2goresume-session kudyba-51-1513733787_stDMATE_dp32 800x600 adsl 16m-jpeg-9 us query 0 both; echo "X2GODATAEND:27cb07d2-e0db-4b73-a4df-9eb0c337c5dc";
kudyba 24760 0.0 0.0 120048 3112 ? S 20:38 0:00 /bin/bash /usr/bin/x2goresume-session kudyba-51-1513733787_stDMATE_dp32 800x600 adsl 16m-jpeg-9 us query 0 both
root 30840 0.0 0.2 180508 16960 ? S 20:46 0:00 /usr/bin/perl /usr/sbin/x2gocleansessions